9 projects
pdbe-mmcif-validator
Validate mmCIF/CIF files against the PDBx/mmCIF dictionary or any CIF dictionary
pdbe-mcp-server
A Model Context Protocol (MCP) server for accessing PDBe (Protein Data Bank in Europe) structural biology data and services
pisa-analysis
This python package works with PISA to analyse data for macromolecular interfaces and interactions in assemblies.
mmcif-gen
CLI tool for creating mmCIF files from various facility data sources
pdbeccdutils
Toolkit to parse and process small molecules in wwPDB
pdberellig
A toolkit for functional annotation of ligands in the PDB
protein-cluster-conformers
Clusters conformations of monomeric protein
pdbe-arpeggio
Arpeggio calculates interatomic contacts based on the rules defined in CREDO.
PDBeCif
A lightweight pure python package for reading, writing and manipulating mmCIF files distributed by the wwPDB.
