ARCCSS Data Archive Tools
Project description
# ARCCSSive
ARCCSS Data Access Tools
[![Documentation Status](https://readthedocs.org/projects/arccssive/badge/?version=latest)](https://readthedocs.org/projects/arccssive/?badge=latest)
[![Build Status](https://travis-ci.org/coecms/ARCCSSive.svg?branch=master)](https://travis-ci.org/coecms/ARCCSSive)
[![CircleCI](https://circleci.com/gh/coecms/ARCCSSive.svg?style=shield)](https://circleci.com/gh/coecms/ARCCSSive)
[![codecov.io](http://codecov.io/github/coecms/ARCCSSive/coverage.svg?branch=master)](http://codecov.io/github/coecms/ARCCSSive?branch=master)
[![Code Health](https://landscape.io/github/coecms/ARCCSSive/master/landscape.svg?style=flat)](https://landscape.io/github/coecms/ARCCSSive/master)
[![Code Climate](https://codeclimate.com/github/coecms/ARCCSSive/badges/gpa.svg)](https://codeclimate.com/github/coecms/ARCCSSive)
[![PyPI version](https://badge.fury.io/py/ARCCSSive.svg)](https://pypi.python.org/pypi/ARCCSSive)
[![Anaconda-Server Badge](https://anaconda.org/coecms/arccssive/badges/version.svg)](https://anaconda.org/coecms/arccssive)
For full documentation please see http://arccssive.readthedocs.org/en/stable
Installing
==========
### Raijin
The stable version of ARCCSSive is available on Rajin in the `analysis27` and
`analysis3` Anaconda environment:
raijin $ module use ~access/modules
raijin $ module load pythonlib/ARCCSSive
and is also available as a module:
raijin $ module use /g/data3/hh5/public/modules
raijin $ module load conda/analysis3
### NCI Virtual Desktops
NCI's virtual desktops allow you to use ARCCSSive from a Jupyter notebook. For
details on how to use virtual desktops see http://vdi.nci.org.au/help
ARCCSSive can be accessed on VDI using the Anaconda environments:
vdi $ module use /g/data3/hh5/public/modules
vdi $ module load conda/analysis3
### Local Install
You can install ARCCSSive locally using either Anaconda or Pip. You will need
to copy the database file from Raijin
$ pip install ARCCSSive
# or
$ conda install -c coecms arccssive
$ scp raijin:/g/data1/ua6/unofficial-ESG-replica/tmp/tree/cmip5_raijin_latest.db $PWD/cmip5.db
$ export CMIP5_DB=sqlite:///$PWD/cmip5.db
### Development Version
To install the current development version with a test database:
$ pip install --user git+https://github.com/coecms/ARCCSSive.git
$ export CMIP5_DB=sqlite:///$HOME/cmip5.db
CMIP5
=====
Query and access the CMIP5 data from Raijin
```python
from ARCCSSive import CMIP5
cmip = CMIP5.DB.connect()
for output in cmip.outputs(model='ACCESS1-0'):
variable = output.variable
files = output.filenames()
```
Uses
[SQLAlchemy](http://docs.sqlalchemy.org/en/rel_1_0/orm/tutorial.html#querying)
to filter and sort the data files.
ARCCSS Data Access Tools
[![Documentation Status](https://readthedocs.org/projects/arccssive/badge/?version=latest)](https://readthedocs.org/projects/arccssive/?badge=latest)
[![Build Status](https://travis-ci.org/coecms/ARCCSSive.svg?branch=master)](https://travis-ci.org/coecms/ARCCSSive)
[![CircleCI](https://circleci.com/gh/coecms/ARCCSSive.svg?style=shield)](https://circleci.com/gh/coecms/ARCCSSive)
[![codecov.io](http://codecov.io/github/coecms/ARCCSSive/coverage.svg?branch=master)](http://codecov.io/github/coecms/ARCCSSive?branch=master)
[![Code Health](https://landscape.io/github/coecms/ARCCSSive/master/landscape.svg?style=flat)](https://landscape.io/github/coecms/ARCCSSive/master)
[![Code Climate](https://codeclimate.com/github/coecms/ARCCSSive/badges/gpa.svg)](https://codeclimate.com/github/coecms/ARCCSSive)
[![PyPI version](https://badge.fury.io/py/ARCCSSive.svg)](https://pypi.python.org/pypi/ARCCSSive)
[![Anaconda-Server Badge](https://anaconda.org/coecms/arccssive/badges/version.svg)](https://anaconda.org/coecms/arccssive)
For full documentation please see http://arccssive.readthedocs.org/en/stable
Installing
==========
### Raijin
The stable version of ARCCSSive is available on Rajin in the `analysis27` and
`analysis3` Anaconda environment:
raijin $ module use ~access/modules
raijin $ module load pythonlib/ARCCSSive
and is also available as a module:
raijin $ module use /g/data3/hh5/public/modules
raijin $ module load conda/analysis3
### NCI Virtual Desktops
NCI's virtual desktops allow you to use ARCCSSive from a Jupyter notebook. For
details on how to use virtual desktops see http://vdi.nci.org.au/help
ARCCSSive can be accessed on VDI using the Anaconda environments:
vdi $ module use /g/data3/hh5/public/modules
vdi $ module load conda/analysis3
### Local Install
You can install ARCCSSive locally using either Anaconda or Pip. You will need
to copy the database file from Raijin
$ pip install ARCCSSive
# or
$ conda install -c coecms arccssive
$ scp raijin:/g/data1/ua6/unofficial-ESG-replica/tmp/tree/cmip5_raijin_latest.db $PWD/cmip5.db
$ export CMIP5_DB=sqlite:///$PWD/cmip5.db
### Development Version
To install the current development version with a test database:
$ pip install --user git+https://github.com/coecms/ARCCSSive.git
$ export CMIP5_DB=sqlite:///$HOME/cmip5.db
CMIP5
=====
Query and access the CMIP5 data from Raijin
```python
from ARCCSSive import CMIP5
cmip = CMIP5.DB.connect()
for output in cmip.outputs(model='ACCESS1-0'):
variable = output.variable
files = output.filenames()
```
Uses
[SQLAlchemy](http://docs.sqlalchemy.org/en/rel_1_0/orm/tutorial.html#querying)
to filter and sort the data files.
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