Skip to main content

Simple way to manage and manipulate BIDS compatible data

Project description

BIDSHandler

A simple way to manage and manipulate BIDS compatible data.

Installation

BIDSHandler requires only one dependency which can be easily installed using pip:

pip install pandas

To install BIDSHandler you can then enter in a terminal:

pip install BIDSHandler

Entering import bidshandler in a python console should not raise an error which indicates that BIDSHandler has been installed correctly.

Basic Usage

BIDSHandler has 5 primary objects; BIDSTree, Project, Subject, Session and Scan, corresponding to different levels within a BIDS archive folder structure. Generally data will be loaded into a BIDSTree object and the child objects are automatically generated. From there it is easy to query and manipulate the BIDS data.

import bidshandler as bh
tree = bh.BIDSTree('folder')
print(tree.projects)
print(tree.subjects)
# etc.

Contributing

BIDSHandler is still in very early stages, but contributions are more than welcome in the form of PR's and by raising issues to discussion potential features. Ideally BIDSHandler would be able to handle any BIDS data from any modality such as MRI and EEG, but the current focus is on MEG data.

Project details


Download files

Download the file for your platform. If you're not sure which to choose, learn more about installing packages.

Filename, size & hash SHA256 hash help File type Python version Upload date
BIDSHandler-0.2.1-py3-none-any.whl (26.6 kB) Copy SHA256 hash SHA256 Wheel py3
BIDSHandler-0.2.1.tar.gz (17.6 kB) Copy SHA256 hash SHA256 Source None

Supported by

Elastic Elastic Search Pingdom Pingdom Monitoring Google Google BigQuery Sentry Sentry Error logging AWS AWS Cloud computing DataDog DataDog Monitoring Fastly Fastly CDN SignalFx SignalFx Supporter DigiCert DigiCert EV certificate StatusPage StatusPage Status page