Internal BFSSI package for retrieving files from BaseMount
Project description
BaseMountRetrieve
Package for retrieving files from BaseMount in the output style of a local MiSeq run.
Requirements
- BaseMount
- Python 3.6
Installation
pip install basemountretrieve
Usage
Usage: basemountretrieve [OPTIONS]
Options:
-p, --projectdir PATH Path to the directory on BaseMount for a particular
project. e.g. basemount/Projects/[your project].
-o, --outdir PATH Directory to dump all runs for project [required]
--version Specify this flag to print the version and exit.
--help Show this message and exit.
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