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Wrapper for easily running cutadapt in batch from a CLI.

Project description

A minimal wrapper for running cutadapt (http://cutadapt.readthedocs.io/en/stable/) in batch mode. Made for the Monckton Group at University of Glasgow, so there may be specific behaviour in this program for the way in which we label our MiSeq data. I honestly can’t remember.

Install

python setup.py install or pip install batchadapt

Usage

Example usage:

$ batchadapt [-h/–help] [-v] [-i INPUT] [-o OUTPUT] [-fwfp AAAAA] [-rvfp GGGGG] [-e 0] [-ov 10]

Arguments

Run batchadapt with the ‘–help’ argument for detailed explanations of what each argument does.

Project details


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Files for BatchAdapt, version 0.22
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