BioLectorPy 0.2.0

A Python package for plotting BioLector results

BioLectorPy

This package is used to plot results from cultivations in a BioLector. This is an ongoing development where functionality is expanded as needed. The input files are the xlsx-spreadsheets that can be exported from the BioLection software and a simple csv-file (see example) that describes the content of each well in the wellplate. Current features include:

• Support of both BioLector and BioLector Pro
• Combine data from multiple experiments
• Plotting of any parameter (pH, DO, biomass) for:
  • Individual wells
  • Each strain / species across medium conditions
  • Multiple species across one or more medium conditions
• Well-plate plots summarizing results, e.g. in terms of max-growth rate, fold-increase etc.
• Estimation of growth rates based on Generalized additive models

Installation

pip install BioLectorPy

Contribution

Feel free to contribute by rasing issues or PRs, or reach out to me directly at [e-mail]

Credit

This package is developed by me, Snorre Sulheim, at SINTEF Industry, Department of Biotechnology and Nanomedicine, Norway. If you use this package in your work please cite this repository.

License

All files available in this repository is subject to the license given in the license file.