Circular RNA analysis toolkits
Project description
CIRCexplorer2
CIRCexplorer2 is the successor of CIRCexplorer with plenty of new features to facilitate circular RNA identification and characterization.
Features
Preciously annotate circular RNAs with high accuracy, good sensitivity and low memory consumption
Support multiple circular RNA aligners (TopHat2/TopHat-Fusion, STAR, MapSplice, BWA and segemehl)
De novo assemble novel circular RNA transcripts
Characterize various of alternative splicing events of circular RNAs
CIRCexplorer2 documentation is available through https://readthedocs.org/ from here, including installation instructions and tutorial.
Citation
Zhang XO*, Dong R*, Zhang Y*, Zhang JL, Luo Z, Zhang J, Chen LL#, Yang L#. Diverse alternative back-splicing and alternative splicing landscape of circular RNAs. Genome Res, 2016, doi:10.1101/gr.202895.115
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