CIRCexplorer2 2.1.2

Circular RNA analysis toolkits

CIRCexplorer2

CIRCexplorer2 is the successor of CIRCexplorer with plenty of new features to facilitate circular RNA identification and characterization.

Features

• Preciously annotate circular RNAs with high accuracy, good sensitivity and low memory consumption

• Support multiple circular RNA aligners (TopHat2/TopHat-Fusion, STAR, MapSplice, BWA and segemehl)

• De novo assemble novel circular RNA transcripts

• Characterize various of alternative splicing events of circular RNAs

CIRCexplorer2 documentation is available through https://readthedocs.org/ from here, including installation instructions and tutorial.

Citation

Zhang XO*, Dong R*, Zhang Y*, Zhang JL, Luo Z, Zhang J, Chen LL#, Yang L#. Diverse alternative back-splicing and alternative splicing landscape of circular RNAs. Genome Res, 2016, doi:10.1101/gr.202895.115