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circular RNA quantification pipeline

Project description


Build Status GitHub release (latest by date) The MIT License GitHub All Releases SourceForge Readthedoc

CIRIquant is a comprehensive analysis pipeline for circRNA detection and quantification in RNA-Seq data


Documentation is available online at


Authors: Jinyang Zhang(, Fangqing Zhao(

Maintainer: Jinyang Zhang

Release Notes

  • Version 1.1: Added support for stranded library and GFF3 format input.
  • Version 1.0: The first released version of CIRIquant.


The code is released under the MIT License. See the LICENSE file for more detail.

Citing CIRIquant

  • Zhang, J., Chen, S., Yang, J. et al. Accurate quantification of circular RNAs identifies extensive circular isoform switching events. Nat Commun 11, 90 (2020) doi:10.1038/s41467-019-13840-9

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Files for CIRIquant, version 1.1
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Filename, size CIRIquant-1.1.tar.gz (38.4 kB) File type Source Python version None Upload date Hashes View

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