Python extension of CNVnator
Project description
CNVpytor - a python extension of CNVnator
CNVpytor is a Python package and command line tool for CNV analysis from depth-of-coverage by mapped reads developed in Abyzov Lab, Mayo Clinic.
CNVpytor project is in early development stage.
Source:: https://github.com/abyzovlab/CNVpytor
Bug reports:: https://github.com/abyzovlab/CNVpytor/issues
API documentation: https://abyzovlab.github.io/CNVpytor/
Dependencies
- gnureadline
- requests
- pysam
- numpy
- scipy
- matplotlib
- h5py >= 2.9
Optional:
- ROOT - for CNVnator root import/export functionality
- seaborn - for additional plotting styles
Install
> pip install cnvpytor
> cnvpytor -download
Using
Check CNVpytor github page.
License
Released under MIT licence.
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CNVpytor-1.0a4.tar.gz
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