A collection
Project description
CalSciPy
This python packages contains a variety of useful methods for handling, processing, and visualizing calcium imaging data. It's intended to be a collection of useful, well-documented functions often used in boilerplate code alongside software packages such as Caiman, SIMA, and Suite2P.
Highlights
- Assign unique colormaps to subsets of ROIs to generate rich, informative videos
- Perona-Malik diffusion for edge-preserving denoising
- Methods for handling Bruker's PrairieView data
- Interactive visualization
Installation
pip install CalSciPy or pip install CalSciPy-<subpackage>
Subpackages
- Bruker
- Coloring
- Event Processing
- Input/Output (I/O)
- Image Processing
- Interactive Visuals
- Reorganization
- Signal Processing
- Static Visuals
Documentation
Hosted at ReadtheDocs. Available locally as HTML, LATEX and PDF.
Release history Release notifications | RSS feed
Download files
Download the file for your platform. If you're not sure which to choose, learn more about installing packages.
Source Distribution
CalSciPy-0.1.0.tar.gz
(14.9 kB
view details)
Built Distribution
CalSciPy-0.1.0-py3-none-any.whl
(16.9 kB
view details)
File details
Details for the file CalSciPy-0.1.0.tar.gz.
File metadata
- Download URL: CalSciPy-0.1.0.tar.gz
- Upload date:
- Size: 14.9 kB
- Tags: Source
- Uploaded using Trusted Publishing? No
- Uploaded via: twine/4.0.2 CPython/3.7.12
File hashes
| Algorithm | Hash digest | |
|---|---|---|
| SHA256 | 7b6140eb808a3c9fb3cc6441cb802492c16d4ea56307a65616efc526fabcac94 |
|
| MD5 | 6538e65219c2c9bb0a3d88fea2f9ef5c |
|
| BLAKE2b-256 | ccca5c855de377e871daf204e19710d5d79dcdf24e245e011b5d197967ebfead |
File details
Details for the file CalSciPy-0.1.0-py3-none-any.whl.
File metadata
- Download URL: CalSciPy-0.1.0-py3-none-any.whl
- Upload date:
- Size: 16.9 kB
- Tags: Python 3
- Uploaded using Trusted Publishing? No
- Uploaded via: twine/4.0.2 CPython/3.7.12
File hashes
| Algorithm | Hash digest | |
|---|---|---|
| SHA256 | 080c3d898becbab08d260fc9fc97d1dfaf49db53c18a6ea9620548903d122a89 |
|
| MD5 | 2b0aec9bf2b708cb8f4e186a1d0e597f |
|
| BLAKE2b-256 | d2cdf8e48ed0225623123cc43229beb7c0366ac5c5dac789fd9e3ab2b64968b3 |
