A collection
Project description
CalSciPy
This python packages contains a variety of useful methods for handling, processing, and visualizing calcium imaging data. It's intended to be a collection of useful, well-documented functions often used in boilerplate code alongside software packages such as Caiman, SIMA, and Suite2P.
Highlights
- Assign unique colormaps to subsets of ROIs to generate rich, informative videos
- Perona-Malik diffusion for edge-preserving denoising
- Methods for handling Bruker's PrairieView data
- Interactive visualization
Installation
pip install CalSciPy or pip install CalSciPy-<subpackage>
Subpackages
- Bruker
- Coloring
- Event Processing
- Input/Output (I/O)
- Image Processing
- Interactive Visuals
- Reorganization
- Signal Processing
- Static Visuals
Documentation
Hosted at ReadtheDocs. Available locally as HTML, LATEX and PDF.
Release history Release notifications | RSS feed
Download files
Download the file for your platform. If you're not sure which to choose, learn more about installing packages.
Source Distribution
CalSciPy-0.1.3.tar.gz
(17.7 kB
view details)
Built Distribution
CalSciPy-0.1.3-py3-none-any.whl
(20.4 kB
view details)
File details
Details for the file CalSciPy-0.1.3.tar.gz.
File metadata
- Download URL: CalSciPy-0.1.3.tar.gz
- Upload date:
- Size: 17.7 kB
- Tags: Source
- Uploaded using Trusted Publishing? No
- Uploaded via: twine/4.0.2 CPython/3.7.12
File hashes
| Algorithm | Hash digest | |
|---|---|---|
| SHA256 | 86e05fc8fc9c3667225c34faca3809c3ede680b8452886e89bbb4ff5b7516f4c |
|
| MD5 | fd577139bbf0c09e32d0ae754e2f1312 |
|
| BLAKE2b-256 | f23c705618ad62c6b261d324e97e2c09587a5d957a4bf9779993ddff2b29d295 |
File details
Details for the file CalSciPy-0.1.3-py3-none-any.whl.
File metadata
- Download URL: CalSciPy-0.1.3-py3-none-any.whl
- Upload date:
- Size: 20.4 kB
- Tags: Python 3
- Uploaded using Trusted Publishing? No
- Uploaded via: twine/4.0.2 CPython/3.7.12
File hashes
| Algorithm | Hash digest | |
|---|---|---|
| SHA256 | a9bd2de03c7724a466eb5fc33477558456d07c0d592fb6076164a94707ab056c |
|
| MD5 | 735ee85ae3d2bdfd50e3a1e57b35af9a |
|
| BLAKE2b-256 | 57dbbcc057d678c6be5419c0dca95f677ea4cfb66564e8dbce3b7020ea5cf01d |
