CodonTransformer 1.2.5

The ultimate tool for codon optimization, transforming protein sequences into optimized DNA sequences specific for your target organisms.

CodonTransformer is ultimate tool for codon optimization, transforming protein sequences into optimized DNA sequences specific for your target organisms. Whether you are a researcher or a practitioner in genetic engineering, CodonTransformer provides a comprehensive suite of features to facilitate your work.

Key Features

• CodonData: Simplifies the process of gathering, preprocessing, and representing data, ensuring you have the clean and well-structured data needed for your training.
• CodonEvaluation: Offers robust scripts to evaluate various metrics for codon optimized sequences, helping you assess the quality and effectiveness of your optimizations.
• CodonPrediction: Enables easy tokenization, loading, and utilization of CodonTransformer for making predictions. It includes various approaches such as High Frequency Choice (HFC), Background Frequency Choice (BFC), random selection, and ICOR.
• CodonUtils: Provides essential utility functions and constants that streamline your workflow and improve efficiency.
• CodonJupyter: Comes with tools for creating demo notebooks, allowing you to quickly set up and demonstrate the capabilities of CodonTransformer in an interactive environment.

Why Choose CodonTransformer?

CodonTransformer is built to make codon optimization accessible and efficient. By leveraging advanced algorithms and a user-friendly interface, it reduces the complexity of genetic sequence optimization, saving you time and effort.