Image analysis for microbial cultures growing on solid agar surfaces
Project description
===========
Colonyzer
===========
Image analysis software for estimating cell density in arrayed microbial cultures growing on solid agar. This module contains a set of functions for spot location, image segmentation and spot size estimation, suitable for quantifying culture size/cell density for libraries of microbial cultures growing on a solid agar surface.
Website describing current, stable release:
<http://research.ncl.ac.uk/colonyzer/>
Open access manuscript describing Colonyzer algorithms:
<http://dx.doi.org/10.1186/1471-2105-11-287>
Open access video and manuscript demonstrating the use of Colonyzer within a Quantitative Fitness Analysis workflow
<http://www.jove.com/video/4018>
Contributors
===========
Conor Lawless <http://www.staff.ncl.ac.uk/conor.lawless/>
Darren Wilkinson <http://www.staff.ncl.ac.uk/d.j.wilkinson/>
Colonyzer
===========
Image analysis software for estimating cell density in arrayed microbial cultures growing on solid agar. This module contains a set of functions for spot location, image segmentation and spot size estimation, suitable for quantifying culture size/cell density for libraries of microbial cultures growing on a solid agar surface.
Website describing current, stable release:
<http://research.ncl.ac.uk/colonyzer/>
Open access manuscript describing Colonyzer algorithms:
<http://dx.doi.org/10.1186/1471-2105-11-287>
Open access video and manuscript demonstrating the use of Colonyzer within a Quantitative Fitness Analysis workflow
<http://www.jove.com/video/4018>
Contributors
===========
Conor Lawless <http://www.staff.ncl.ac.uk/conor.lawless/>
Darren Wilkinson <http://www.staff.ncl.ac.uk/d.j.wilkinson/>
Project details
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