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Image analysis for microbial cultures growing on solid agar surfaces

Project Description

Image analysis software for estimating cell density in arrayed microbial cultures growing on solid agar. This module contains a set of functions for spot location, image segmentation and spot size estimation, suitable for quantifying culture size/cell density for libraries of microbial cultures growing on a solid agar surface.

Website describing current, stable release.

Open access manuscript describing Colonyzer algorithms:

Open access video and manuscript demonstrating the use of Colonyzer within a Quantitative Fitness Analysis workflow

Release history Release notifications

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1.1.22

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1.1.20

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1.1.19

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1.1.18

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1.1.9

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1.1.1

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1.1.0

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1.0.88

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1.0.87

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1.0.86

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1.0.78

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1.0.63

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1.0.61

This version
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1.0.60

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1.0.59

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1.0.58

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1.0.57

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1.0.56

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1.0.45

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1.0.1

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1.0

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Filename, size & hash SHA256 hash help File type Python version Upload date
Colonyzer2-1.0.60.zip (33.6 kB) Copy SHA256 hash SHA256 Source None Jul 4, 2013

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