Compyrtment 0.5.7

A simple Python library for compartment models

Compyrtment is a simple Python library to work with compartment models. It’s a simple tool to aid with fast prototyping with models such as the SIR, SIS and SEIR epidemic models or the Lotka-Volterra model of predation. It supports:

• Designing models with arbitrary states and constant, linear and quadratic couplings between them;

• Numerical integration of the ODE system of a model;

• Numerical integration of ‘sensitivity curves’ - the gradient of each curve with respect to parameters as well as initial conditions;

• Fitting a model’s parameters to existing data;

• Stochastic simulation using Gillespie’s algorithm