Connectome-Spatial-Smoothing 0.1.1

Connectome Spatial Smoothing

Connectome Spatial Smoothing

Here, you may find the Python codes and sample scripts for Connectome Spatial Smoothing (CSS).

For more information you may check our article on Connectome Spatial Smoothing (CSS): concepts, methods and evaluation (currently under review). All resources are provided as complementary to the following article:

...article information to be added after publication...

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The codes in this repository mainly perform the following tasks:

• Map high-resolution structural connectomes from tractography

• Map atlas-resolution structural connectomes from tractography

• Compute the CSS smoothing kernel with selected parameters

• Perform CSS on high-resolution connectomes

• Perform CSS directly on atlas connectomes

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Installation

To use CSS functionality in your code, you can install the package with the following command:

pip install Connectome-Spatial-Smoothing

Then, you could simply use the package in your own code after importing:

from Connectome_Spatial_Smoothing import CSS as css

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We have provided a short jupyter notebook showcasing all the functionalities described above. You may use the following link to open this notebook in an interactive google colab session: