DNBelabC4 scRNA QC pipeline
Project description
DNBelab_C_Series_HT_scRNA-analysis-software
An open source and flexible pipeline to analysis high-throughput DNBelab C Series single-cell RNA datasets
Introduction
- Propose
- An open source and flexible pipeline to analyze DNBelab C SeriesTM single-cell RNA datasets.
- Language
- Python3(>=3.8.*),R scripts
- Hardware/Software requirements
- x86-64 compatible processors.
- require at least 50GB of RAM and 4 CPU.
- centos 7.x 64-bit operating system (Linux kernel 3.10.0, compatible with higher software and hardware configuration).
Directory contents
- DNBC4tools config, software and script directories
- doc Instruction for use
- example Example of use the pipline
- scripts Miscellaneous scripts
- wdl WDL pipeline
Installation
installation manual here
Database
Create database manual here
Start
WDL version: Customize the config file, use wdl to analysis
Command line version: Using the DNBC4tools command line
Docker
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DNBC4dev-2.0.7.tar.gz
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