DNBelabC4 scRNA QC pipeline
Project description
DNBelab_C_Series_HT_scRNA-analysis-software
An open source and flexible pipeline to analysis high-throughput DNBelab C Series single-cell RNA datasets
Introduction
- Propose
- An open source and flexible pipeline to analyze DNBelab C SeriesTM single-cell RNA datasets.
- Language
- Python3(>=3.8.*),R scripts
- Hardware/Software requirements
- x86-64 compatible processors.
- require at least 50GB of RAM and 4 CPU.
- centos 7.x 64-bit operating system (Linux kernel 3.10.0, compatible with higher software and hardware configuration).
Directory contents
- DNBC4tools config, software and script directories
- doc Instruction for use
- example Example of use the pipline
- scripts Miscellaneous scripts
- wdl WDL pipeline
Installation
installation manual here
Database
Create database manual here
Start
WDL version: Customize the config file, use wdl to analysis
Command line version: Using the DNBC4tools command line
Docker
Project details
Release history Release notifications | RSS feed
Download files
Download the file for your platform. If you're not sure which to choose, learn more about installing packages.
Source Distribution
DNBC4tools-2.0.6.tar.gz
(4.5 MB
view hashes)
Built Distribution
Close
Hashes for DNBC4tools-2.0.6-py3-none-any.whl
Algorithm | Hash digest | |
---|---|---|
SHA256 | c677d8ae635e7d8259ace39c00b8d4886f76c98bfcffab5d2eb5aa539ea2cfeb |
|
MD5 | 65065f933f31a1451d730a30ccb67335 |
|
BLAKE2b-256 | dc5a579db6f1b522f6e77abbb065946798e4feba36859c0217aa06aac156893c |