Draw-Reaction-zhiyix2 0.1.0

A package for drawing compound reaction

Draw_Reaction

About The Project

This program draws reactions from a txt file with reactions in the SBML format.

Getting Started

The followings are the instructions on setting the program locally.

Prerequisites

1. Python 3.10 or higher.
2. Tkinter 0.1.0 or higher. To setup the environment for executing "python Draw_Reaction.py" you need to install the Tkinter by typing "pip install tk" in the terminal/cml.

 pip install tk

Installation

There are two options to install the program.

1. Clone the repo from GitHub

 git clone https://github.com/zhiyix2/Draw_Reaction.git

2. Install the package using pip

 pip install Draw_Reaction-zhiyix2

Usage

This program can be run by executing the following:

 python __main__.py <TXT File Path>

This program draws reactions from given txt file. The given txt file has to include the reaction section according to the format below: // Reactions:

J0: MKKK => MKKK_P; uVol*J0_V1*MKKK/((1 + (MAPK_PP/J0_Ki)^J0_n)*(J0_K1 + MKKK));

J1: MKKK_P => MKKK; uVol*J1_V2*MKKK_P/(J1_KK2 + MKKK_P);

J2: MKK => MKK_P; uVol*J2_k3*MKKK_P*MKK/(J2_KK3 + MKK);

J3: MKK_P => MKK_PP; uVol*J3_k4*MKKK_P*MKK_P/(J3_KK4 + MKK_P);

J4: MKK_PP => MKK_P; uVol*J4_V5*MKK_PP/(J4_KK5 + MKK_PP);

J5: MKK_P => MKK; uVol*J5_V6*MKK_P/(J5_KK6 + MKK_P);

License

Distributed under the MIT License. See LICENSE for more information.

Contact

Zhiying Xie - [e-mail]

Project Link: https://github.com/zhiyix2/Draw_Reaction.git