Skip to main content

No project description provided

Project description

Ecocyc-Database-Parsing

Helpful functions for parsing EcoCyc Database file.

EcoCyc is a heavy curated scientific database for the bacterium Escherichia coli K-12 MG1655. The EcoCyc project performs literature-based curation of its genome, and of transcriptional regulation, transporters, and metabolic pathways.

Database link: https://ecocyc.org/

This repository is aiming at facilitating database analysis with Python. Mainly, the function read database files into a pandas.DataFrame. The database file formats can be found here: http://brg.ai.sri.com/ptools/flatfile-format.html

To import the package. import Ecocyc_Parse as ep

Project details


Download files

Download the file for your platform. If you're not sure which to choose, learn more about installing packages.

Files for Ecocyc-Parse, version 0.0.1
Filename, size File type Python version Upload date Hashes
Filename, size Ecocyc_Parse-0.0.1.tar.gz (2.3 kB) File type Source Python version None Upload date Hashes View

Supported by

AWS AWS Cloud computing Datadog Datadog Monitoring Facebook / Instagram Facebook / Instagram PSF Sponsor Fastly Fastly CDN Google Google Object Storage and Download Analytics Huawei Huawei PSF Sponsor Microsoft Microsoft PSF Sponsor NVIDIA NVIDIA PSF Sponsor Pingdom Pingdom Monitoring Salesforce Salesforce PSF Sponsor Sentry Sentry Error logging StatusPage StatusPage Status page