About
EggLib is a Python library, largely implemented in C++, for evolutionary genetics and genomics. Main features are sequence data management, sequence polymorphism analysis, and coalescent simulations. EggLib is a flexible Python module with a performant underlying C++ library and allows fast and intuitive development of Python programs and scripts.
EggLib home page: https://www.egglib.org
Installation
EggLib is available on pip. For more information on installing EggLib or downloading source code please refer to the installation section of the documentation: https://egglib.org/install.html.
Cloning
You can clone the whole package using:
git clone https://gitlab.com/demita/egglib.git
For example, this lets you access to the current version on development:
cd egglib git checkout dev
Building local documentation
To generate the documentation locally, you should clone the repository, install EggLib and the python-sphinx package, and run this:
python -m sphinx doc/ ../doc
The first argument is the location of the doc directory within the EggLib package. The second argument is the destination of the generated documentation. ../doc is just an example.
Citation
Siol M., T. Coudoux, S. Ravel and S. De Mita. 2022. EggLib 3: A python package for population genetics and genomics. Mol Ecol. Res. 22:3176-3187. https://doi.org/10.1111/1755-0998.13672
License
EggLib is free software: you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
EggLib is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details.
1 maintainer
Metadata
1 maintainer
Release files for EggLib 3.6.1
For a detailed explanation of source distributions (sdists) and built distributions (wheels), please see the package formats documentation.
Source distribution (sdist)
| File | Size | Uploaded | |
|---|---|---|---|
| egglib-3.6.1.tar.gz | 57.7 MB | Details |
Release files / egglib-3.6.1.tar.gz
| Download URL | egglib-3.6.1.tar.gz |
|---|---|
| Size | 57.7 MB |
| Tags | Source |
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