Library to simulate evolution of large populations that are polymorphic at many loci.

Navigation

Verified details

These details have been verified by PyPI
Maintainers
Avatar for iosonofabio from gravatar.com iosonofabio Avatar for ivan_aksamentov from gravatar.com ivan_aksamentov Avatar for neherlab_bot from gravatar.com neherlab_bot Avatar for rneher from gravatar.com rneher

Unverified details

These details have not been verified by PyPI
Project links
Meta
Classifiers

Project description

Build Status Documentation Status License

  • License: GPL3
  • Author: Richard Neher, Fabio Zanini
  • Creation: 2012/09/12

Description

Genetic drift and draft

FFPopSim is a C++ and Python library to simulate large populations that are polymorphic at many loci. It allows for asexual and recombining populations and complex fitness functions, including pairwise and higher order epistasis. It is designed to study the effects of linked selection, the rare processes in large populations, and can be used to address a large variety of population genetics problems.

FFPopSim is easy to use via the Python interface and can be extended or modified both at the C++ or Python level.

Downloads

The official sources and releases are online at:

https://github.com/neherlab/ffpopsim

https://github.com/iosonofabio/ffpopsim

Docs

Documentation and examples are online at:

http://webdav.tuebingen.mpg.de/ffpopsim/

http://ffpopsim.readthedocs.io/en/latest/

(The latter only for the Python interface.)

Install

To install the library, read the INSTALL file. The two configuration files are:

  • Makefile
  • setup.py (for the Python extension)

Enjoy.

Project details

Verified details

These details have been verified by PyPI
Maintainers
Avatar for iosonofabio from gravatar.com iosonofabio Avatar for ivan_aksamentov from gravatar.com ivan_aksamentov Avatar for neherlab_bot from gravatar.com neherlab_bot Avatar for rneher from gravatar.com rneher

Unverified details

These details have not been verified by PyPI
Project links
Meta
Classifiers

Release history Release notifications | RSS feed

This version

3.1.2

3.1.1

3.1.0

3.0.0

2.0

Download files

Download the file for your platform. If you're not sure which to choose, learn more about installing packages.

Source Distribution

FFPopSim-3.1.2.tar.gz (116.0 kB view details)

Uploaded Source

Built Distributions

FFPopSim-3.1.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (9.1 MB view details)

Uploaded CPython 3.11 manylinux: glibc 2.17+ x86-64

FFPopSim-3.1.2-cp311-cp311-macosx_11_0_arm64.whl (398.7 kB view details)

Uploaded CPython 3.11 macOS 11.0+ ARM64

FFPopSim-3.1.2-cp311-cp311-macosx_10_9_x86_64.whl (1.5 MB view details)

Uploaded CPython 3.11 macOS 10.9+ x86-64

FFPopSim-3.1.2-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (9.1 MB view details)

Uploaded CPython 3.10 manylinux: glibc 2.17+ x86-64

FFPopSim-3.1.2-cp310-cp310-macosx_11_0_arm64.whl (398.7 kB view details)

Uploaded CPython 3.10 macOS 11.0+ ARM64

FFPopSim-3.1.2-cp310-cp310-macosx_10_9_x86_64.whl (1.5 MB view details)

Uploaded CPython 3.10 macOS 10.9+ x86-64

FFPopSim-3.1.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (9.1 MB view details)

Uploaded CPython 3.9 manylinux: glibc 2.17+ x86-64

FFPopSim-3.1.2-cp39-cp39-macosx_11_0_arm64.whl (398.7 kB view details)

Uploaded CPython 3.9 macOS 11.0+ ARM64

FFPopSim-3.1.2-cp39-cp39-macosx_10_9_x86_64.whl (1.5 MB view details)

Uploaded CPython 3.9 macOS 10.9+ x86-64

FFPopSim-3.1.2-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (9.1 MB view details)

Uploaded CPython 3.8 manylinux: glibc 2.17+ x86-64

FFPopSim-3.1.2-cp38-cp38-macosx_11_0_arm64.whl (399.4 kB view details)

Uploaded CPython 3.8 macOS 11.0+ ARM64

FFPopSim-3.1.2-cp38-cp38-macosx_10_9_x86_64.whl (1.5 MB view details)

Uploaded CPython 3.8 macOS 10.9+ x86-64

FFPopSim-3.1.2-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (9.1 MB view details)

Uploaded CPython 3.7m manylinux: glibc 2.17+ x86-64

FFPopSim-3.1.2-cp37-cp37m-macosx_10_9_x86_64.whl (1.5 MB view details)

Uploaded CPython 3.7m macOS 10.9+ x86-64

FFPopSim-3.1.2-cp36-cp36m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (9.1 MB view details)

Uploaded CPython 3.6m manylinux: glibc 2.17+ x86-64

FFPopSim-3.1.2-cp36-cp36m-macosx_10_9_x86_64.whl (1.5 MB view details)

Uploaded CPython 3.6m macOS 10.9+ x86-64

File details

Details for the file FFPopSim-3.1.2.tar.gz.

File metadata

  • Download URL: FFPopSim-3.1.2.tar.gz
  • Upload date:
  • Size: 116.0 kB
  • Tags: Source
  • Uploaded using Trusted Publishing? No
  • Uploaded via: twine/4.0.1 CPython/3.9.15

File hashes

Hashes for FFPopSim-3.1.2.tar.gz
Algorithm Hash digest
SHA256 5b68f237adbe8067a89db071de3b3587ac2b3e939e2f90ee0e2b0c09429febcf
MD5 33f1c8667cd8690147e33109132991e4
BLAKE2b-256 8b43a92c53c7824d5c1afc0a38b612cf72718c7fbbab767d6b0f9f51618626b1

See more details on using hashes here.

File details

Details for the file FFPopSim-3.1.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.

File metadata

File hashes

Hashes for FFPopSim-3.1.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl
Algorithm Hash digest
SHA256 a0cab091dc068760df17205ed42461ea510114704da730222b3a9212853952fd
MD5 f84c646c1a489222eff4c1644a0f456b
BLAKE2b-256 8129de6d88d6dff643923849a82fd27394a0b62e24a9dd83ec6ed5941f1d88bd

See more details on using hashes here.

File details

Details for the file FFPopSim-3.1.2-cp311-cp311-macosx_11_0_arm64.whl.

File metadata

File hashes

Hashes for FFPopSim-3.1.2-cp311-cp311-macosx_11_0_arm64.whl
Algorithm Hash digest
SHA256 641d2d80d4e0bb8d9dae8410922f6b1e05bc5366912aba741b00c34e0d5cb3a9
MD5 0f22ead938e0be13c7ebceef1526f246
BLAKE2b-256 deb9300dbb86cc2721c6acf1d597d4d13d533baf42978ef4bf51825f4e30f20b

See more details on using hashes here.

File details

Details for the file FFPopSim-3.1.2-cp311-cp311-macosx_10_9_x86_64.whl.

File metadata

File hashes

Hashes for FFPopSim-3.1.2-cp311-cp311-macosx_10_9_x86_64.whl
Algorithm Hash digest
SHA256 1695761c655fa84f39ac9ef22e8ae8680afc7ac82638a9ff8b0af9d304f5e51d
MD5 f0ec97d81f6a5c427d6ba63be4b477b4
BLAKE2b-256 adab7ca26297aae00b8760865007b8bd1175b0ddb5c95f9c5eb9e22a149b3040

See more details on using hashes here.

File details

Details for the file FFPopSim-3.1.2-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.

File metadata

File hashes

Hashes for FFPopSim-3.1.2-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl
Algorithm Hash digest
SHA256 8426b89dd24f1c3965e7cf696d527bd38be6ec5eae4a3ff3f65cb5fb8d671952
MD5 9965023bd3843186f2eab714702f910e
BLAKE2b-256 da21d2b28d9643463a25d862796550dfb8b2f4b577c3aaca60c4046f19cab674

See more details on using hashes here.

File details

Details for the file FFPopSim-3.1.2-cp310-cp310-macosx_11_0_arm64.whl.

File metadata

File hashes

Hashes for FFPopSim-3.1.2-cp310-cp310-macosx_11_0_arm64.whl
Algorithm Hash digest
SHA256 a510bb64dd0edbcfdcb2d9d7bb13b0cf81c87b144f57bd748e51503c3fde2ac5
MD5 c991ba698aba431450af8299b7578d18
BLAKE2b-256 2497008287474bb40ff99371375ac745dc6be54392f83e9996afb1a1d5854154

See more details on using hashes here.

File details

Details for the file FFPopSim-3.1.2-cp310-cp310-macosx_10_9_x86_64.whl.

File metadata

File hashes

Hashes for FFPopSim-3.1.2-cp310-cp310-macosx_10_9_x86_64.whl
Algorithm Hash digest
SHA256 2f749e145436961db96bfe5f1b04a69b7862cee38283ec9ad368bc8fd2487a13
MD5 9622f740b4a72d09c26f1ead577f30c2
BLAKE2b-256 ec29ff4b3257c1f6f2628ffb71ca95a1bba92b068fc4ff721171230bb7281c72

See more details on using hashes here.

File details

Details for the file FFPopSim-3.1.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.

File metadata

File hashes

Hashes for FFPopSim-3.1.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl
Algorithm Hash digest
SHA256 1e7d34233d1c755678d8035cffc4d969efc9bc9367196239d136e496513223b1
MD5 7aefd75008f7c7b39f6e4f8143dc7158
BLAKE2b-256 6cf980f5c4956d31a86675fbd6389386415ae353a9106b5c06bd2468fe7badd8

See more details on using hashes here.

File details

Details for the file FFPopSim-3.1.2-cp39-cp39-macosx_11_0_arm64.whl.

File metadata

File hashes

Hashes for FFPopSim-3.1.2-cp39-cp39-macosx_11_0_arm64.whl
Algorithm Hash digest
SHA256 cc94bffed14a9c3a0c105b8af94f7742ed76db8e1b0cde319b38339dbe736dba
MD5 efc0bc914a909f258ff67d59bf1e4687
BLAKE2b-256 da6fefd671d23e606bc26c94fbef1882e7fe3df39c0bcda9b29ff0d6eac444cd

See more details on using hashes here.

File details

Details for the file FFPopSim-3.1.2-cp39-cp39-macosx_10_9_x86_64.whl.

File metadata

File hashes

Hashes for FFPopSim-3.1.2-cp39-cp39-macosx_10_9_x86_64.whl
Algorithm Hash digest
SHA256 31986846a00f8380fdeacf1d6816d3b682b55a558b3eef6927266a60960e574c
MD5 c1565daf8f16ca2418222328f0522972
BLAKE2b-256 9233868c93d15bb071a12c83f0576441ffd72f07818af893ad49d3d64d58e119

See more details on using hashes here.

File details

Details for the file FFPopSim-3.1.2-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.

File metadata

File hashes

Hashes for FFPopSim-3.1.2-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl
Algorithm Hash digest
SHA256 c607c7d0ff07e085b6e797ef987c42a73ec3438a72e239e2b94fe5f35340da01
MD5 4d2d3bfc333879424cafaeb2ff7e94e0
BLAKE2b-256 857a14ba5fff474ca1ff42c92be756ebd61597dc0209bb7c3e17359335bbb850

See more details on using hashes here.

File details

Details for the file FFPopSim-3.1.2-cp38-cp38-macosx_11_0_arm64.whl.

File metadata

File hashes

Hashes for FFPopSim-3.1.2-cp38-cp38-macosx_11_0_arm64.whl
Algorithm Hash digest
SHA256 d30598402d435ef976986a2e58f8346c02e39d3238e47d0e388186f999acfbe6
MD5 8dd72aaa1c8b02debf4ea73ef6bd9d69
BLAKE2b-256 acd7e11df23b6f157a2f0107fc3f8b52ad4f77ded471b4c19d27a1b6bf22e625

See more details on using hashes here.

File details

Details for the file FFPopSim-3.1.2-cp38-cp38-macosx_10_9_x86_64.whl.

File metadata

File hashes

Hashes for FFPopSim-3.1.2-cp38-cp38-macosx_10_9_x86_64.whl
Algorithm Hash digest
SHA256 9c4267df3ba4807c678b459671a350ad1b3928aadf4ea9e100d6a762db2c4248
MD5 f4e271a2e54f02845a3afebef797392e
BLAKE2b-256 5b2e570cd01bb4c3a9efca26e9c0e4a8706488c6f56b4090a8dbf44ad610007e

See more details on using hashes here.

File details

Details for the file FFPopSim-3.1.2-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.

File metadata

File hashes

Hashes for FFPopSim-3.1.2-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl
Algorithm Hash digest
SHA256 866e43b527bdad27c954b79af5767f0d0940358fa80b5e70413f9e935777e1c7
MD5 1dd63dee34d0b4e27b704385a344c0e8
BLAKE2b-256 71666d747e4f0e6ea5d415dbdc72a66f34523dd038d27767d71ffc3a8baea1d9

See more details on using hashes here.

File details

Details for the file FFPopSim-3.1.2-cp37-cp37m-macosx_10_9_x86_64.whl.

File metadata

File hashes

Hashes for FFPopSim-3.1.2-cp37-cp37m-macosx_10_9_x86_64.whl
Algorithm Hash digest
SHA256 35e5dd198a46696bc355003176a6eb3766958e05ad8c66bd9f7e09ba3239d758
MD5 8913d74af5571e93dac51f3b58e9e9a0
BLAKE2b-256 035aa507bf8ac5e027f4d1c4adb0c7f61d5072578d6f97fe46d498b037fa6d32

See more details on using hashes here.

File details

Details for the file FFPopSim-3.1.2-cp36-cp36m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.

File metadata

File hashes

Hashes for FFPopSim-3.1.2-cp36-cp36m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl
Algorithm Hash digest
SHA256 f52532085aa7d21c71433a2259192f0a7b09bd27c704bf02a49f2f9549828253
MD5 91a9896e1f3760af4ef51f2db1cc3223
BLAKE2b-256 5777b8cca9a8350d2c0a26b4c263541590db213a1ff8c9aedc33612ad450ca9f

See more details on using hashes here.

File details

Details for the file FFPopSim-3.1.2-cp36-cp36m-macosx_10_9_x86_64.whl.

File metadata

File hashes

Hashes for FFPopSim-3.1.2-cp36-cp36m-macosx_10_9_x86_64.whl
Algorithm Hash digest
SHA256 4368fedd7438e5882175cf4c020df201b45be3450cead3920fbba2e75df70f70
MD5 bd6e7716eb39d8c38477619425c54713
BLAKE2b-256 be74a6f86d42fb4a3907c283f74c759e2efec06aea60dd890b350df1b4938467

See more details on using hashes here.

Supported by

AWS AWS Cloud computing and Security Sponsor Datadog Datadog Monitoring Fastly Fastly CDN Google Google Download Analytics Microsoft Microsoft PSF Sponsor Pingdom Pingdom Monitoring Sentry Sentry Error logging StatusPage StatusPage Status page