Making screenshots for presentations and manuscripts.
Project description
Screenshot Maker
This project helps create screenshots for medical images for use in presentations and/or manuscripts.
Installation
git clone https://github.com/sarthakpati/screenshot_maker.git
cd screenshot_maker
conda create -n venv_screenshot python=3.7 -y
conda activate venv_screenshot
pip install -e .
OR directly via Pip:
pip install FigureGenerator
Usage
python ./figure_generator -h
usage: FigureGenerator [-h] -images IMAGES [-masks MASKS]
[-mask_opacity MASK_OPACITY] [-colormap COLORMAP]
-output OUTPUT [-axisrow AXISROW] [-bounded BOUNDED]
[-borderpc BORDERPC] [-v]
Constructing screenshots from medical images.
Contact: software@cbica.upenn.edu
This program is NOT FDA/CE approved and NOT intended for clinical use.
Copyright (c) 2021 University of Pennsylvania. All rights reserved.
optional arguments:
-h, --help show this help message and exit
-images IMAGES Input image files (comma-separated without any spaces in path and co-registered)
-masks MASKS Mask files (comma-separated without any spaces in path and co-registered with images); if multiple files are passed, first is ground truth
-mask_opacity MASK_OPACITY
Mask opacity between 0-1
-output OUTPUT Output screenshot file
-axisrow AXISROW Put all axes views across each column and stack images and blends in rows, defaults to False
-bounded BOUNDED Construct bounding box around binarized ground truth
-borderpc BORDERPC Percentage of size to use as border around bounding box (used only when mask and bounded are defined)
-v, --version Show program's version number and exit.
Examples
- Vertical screenshot of multiple images:
python ./figure_generator \
-images C:/input/subject_001_flair.nii.gz,C:/input/subject_001_t1ce.nii.gz,C:/input/subject_001_t1.nii.gz,C:/input/subject_001_t2.nii.gz \
-masks C:/input/subject_001_seg.nii.gz \
-axisrow False \
-output C:/input/fig.png
Gives the following output:
- Horizontal screenshot of multiple images:
python ./figure_generator \
-images C:/input/subject_001_flair.nii.gz,C:/input/subject_001_t1ce.nii.gz,C:/input/subject_001_t1.nii.gz,C:/input/subject_001_t2.nii.gz \
-masks C:/input/subject_001_seg.nii.gz \
-axisrow True \
-output C:/input/fig.png
Gives the following output:
Project details
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Source Distribution
FigureGenerator-0.0.1.tar.gz
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