FlowKit 0.0.9

Flow Cytometry Toolkit

FlowKit

Intuitive Python framework for flow cytometry analysis and visualization, including GatingML support.

Requirements

FlowKit supports Python version 3.6 or above. All dependencies are installable via pip, and include:

• flowio >= 0.9.3
• flowutils >= 0.6.8
• numpy >= 0.15
• scipy >= 1.0
• pandas >= 0.19
• matplotlib >= 3.0
• seaborn >= 0.9
• bokeh >= 1.0
• lxml >= 4.2
• anytree >= 2.4

Installation

From PyPI

pip install flowkit

From source

git clone https://github.com/whitews/flowkit
cd flowkit
python setup.py install

Usage

See the notebook tutorial.