FreeTrace
[!IMPORTANT]
Requirements
- Windows(10/11) / GNU/Linux(Debian/Ubuntu) / MacOS(Sequoia/Tahoe)
- C compiler (clang)
- Python3.10 ↑
- GPU & Cuda12 on GNU/Linux with pre-trained models (recommended)
[!NOTE]
- PRE-REQUISITE: pre-installation and compilation, check tutorial.
- Check compatibilities of Python and Tensorflow to run FreeTrace with source code.
- Without GPU, FreeTrace is slow if it infers under fractional Brownian motion.
- Current version is stable with python 3.10 / 3.11 / 3.12
Visualised FreeTrace results
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FreeTrace infers individual trajectories from time-series images with reconnection of the detected particles under fBm.
Contact person
junwoo.park@sorbonne-universite.fr
Contributors
If you use this software, please cite it as below.
@article {Park2026.01.08.698486,
author = {Park, Junwoo and Sokolovska, Nataliya and Cabriel, Cl{\'e}ment and Kobayashi, Asaki and Corsin, Enora and Garcia Fernandez, Fabiola and Izeddin, Ignacio and Min{\'e}-Hattab, Judith},
title = {Novel estimation of memory in molecular dynamics with extended and comprehensive single-molecule tracking software: FreeTrace},
elocation-id = {2026.01.08.698486},
year = {2026},
doi = {10.64898/2026.01.08.698486},
publisher = {Cold Spring Harbor Laboratory},
URL = {https://www.biorxiv.org/content/early/2026/01/10/2026.01.08.698486},
eprint = {https://www.biorxiv.org/content/early/2026/01/10/2026.01.08.698486.full.pdf},
journal = {bioRxiv}
}
1 maintainer
Release files for FreeTrace 1.6.1.1
For a detailed explanation of source distributions (sdists) and built distributions (wheels), please see the package formats documentation.
Source distribution (sdist)
| File | Size | Uploaded | |
|---|---|---|---|
| freetrace-1.6.1.1.tar.gz | 1.4 MB | Details |
Release files / freetrace-1.6.1.1.tar.gz
| Download URL | freetrace-1.6.1.1.tar.gz |
|---|---|
| Size | 1.4 MB |
| Tags | Source |
|
SHA-256 checksum How to use checksums |
edc5839e3983621cf0c7bc2363117e560d05ae4d68489bad5edc1625e4927566
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BLAKE2b-256 checksum How to use checksums |
ed0124d12c5cc122f435f29fb6b8d6f126a879c4206b4ea11a40375424193c50
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| Upload date | |
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Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
twine/6.2.0 CPython/3.12.3
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