Python CLI and module for running the GSVA R bioconductor package with Python Pandas inputs and outputs.
Project description
# GSVA Python CLI
Python hooks for R’s GSVA bioconductor package to make working in Pandas easier, and a handy CLI for execution of GSVA.
Autodoc manual is here: https://jason-weirather.github.io/GSVA/
#### This is not the offical site for the GSVA bioconductor package
##### Find the official R package here
https://doi.org/doi:10.18129/B9.bioc.GSVA
##### And if you find this useful, please cite the author’s publication
Hänzelmann S, Castelo R and Guinney J (2013). “GSVA: gene set variation analysis for microarray and RNA-Seq data.” BMC Bioinformatics, 14, pp. 7. doi: 10.1186/1471-2105-14-7, http://www.biomedcentral.com/1471-2105/14/7.
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