GreenHouseEI 0.3

unzip compressed files that contain plant images, and covert the images into numpy arrays

# GreenhouseEI Documentation # SD2019-Plant Phenotyping ## Dependencies * numpy * opencv

## Functionality 1. info(plant_ID, date, path) * input: plant_ID, date, path * output: print types of images that are available * example: `tools.info("JS39-65", "2018-04-11", "/Users/john/PycharmProjects/Library_SD/output")` 2. unzip(plant_ID, date, image_type, path): * input: plant_ID, date, image_type, path * output: the folder of images that match plant ID, date, and image type. * example: `tools.unzip("JS39-65", "2018-04-11", "Nir", "/Users/john/PycharmProjects/Library_SD/output")` 3. preprocess(plant_ID, date, path): * input: plant_ID, date, path * output: numpy arrays of Hyperspectral images * example: `tools.preprocess("JS39-65", "2018-04-11", "/Users/john/PycharmProjects/Library_SD/output")` 4. zip2np(plant_ID, date, path) * input: plant_ID, date, path * output: numpy arrays of Hyperspectral images from zip files. * example: `tools.zip2np("JS39-65", "2018-04-11", "/Users/john/PycharmProjects/Library_SD/output")`

## Running the library 1. Warnings * the plant_ID should be in a format like “JS39-65”, the date should be in a format like “2018-04-11” * the possible image types are Hyp, Nir, Vis, Fluo, IR * Hyperspectral images should be reconstructed first, before running the “preprocess” to produce the numpy array 2. import the module as a Python package * from greenhouseEI import tools * tools.info([plant_ID], [date], [path]) * tools.unzip([plant name], [date], [image type], [path]) * tools.preprocess([plant name], [date], [path]) * tools.zip2np([plant name], [date], [path]) 3. running the module in terminal * python3 -m greenhouseEI.tools info -n JS39-65 -d 2018-04-11 -p /Users/john/PycharmProjects/Library_SD/output * python3 -m greenhouseEI.tools unzip -n JS39-65 -d 2018-04-11 -t Hyp -p /Users/john/PycharmProjects/Library_SD/output * python3 -m greenhouseEI.tools preprocess -n JS39-65 -d 2018-04-11 -p /Users/john/PycharmProjects/Library_SD * python3 -m greenhouseEI.tools zip2np -n JS39-65 -d 2018-04-11 -p /Users/john/PycharmProjects/Library_SD/output

## Demonstration