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a simulator for HGT in microbial communities

Project description

HgtSIM: a simulator for horizontal gene transfer (HGT) in microbial communities

Weizhi Song (

The Centre for Marine Bio-Innovation (CMB), University of New South Wales, Sydney, Australia

Release history:

1.1.0 (2019-01-06): HgtSIM can be installed with “pip install HgtSIM” now.

1.0.1 (2018-04-06): combined the ‘-mixed’, ‘-mini’ and ‘-maxi’ options to ‘-mixed min-max’.

1.0.0 (2017-09-16): support for draft genome. support for dynamic flanking sequences. support for the ‘mixed’ mode. support for the ‘keep_cds’ option.

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