Skip to main content

Helper package which implements HiCMatrix class for HiCExplorer and pyGenomeTracks

Project description

This library implements the central class of HiCExplorer to manage Hi-C interaction matrices. It is separated from the main project to enable to use of Hi-C matrices in other project without the dependency to HiCExplorer. Moreover, it enables us to use the already separated pyGenomeTracks (former hicPlotTADs) to be used in HiCExplorer because mutual dependencies are resolved.

Read support

  • h5

  • cool

  • hicpro

  • homer

Write support

  • h5

  • cool

  • homer

  • ginteractions

Project details


Download files

Download the file for your platform. If you're not sure which to choose, learn more about installing packages.

Source Distribution

HiCMatrix-5.tar.gz (18.8 kB view details)

Uploaded Source

Built Distributions

HiCMatrix-5-py3-none-any.whl (34.0 kB view details)

Uploaded Python 3

HiCMatrix-5-py2-none-any.whl (23.0 kB view details)

Uploaded Python 2

File details

Details for the file HiCMatrix-5.tar.gz.

File metadata

  • Download URL: HiCMatrix-5.tar.gz
  • Upload date:
  • Size: 18.8 kB
  • Tags: Source
  • Uploaded using Trusted Publishing? No
  • Uploaded via: twine/1.12.1 pkginfo/1.4.2 requests/2.20.1 setuptools/40.6.2 requests-toolbelt/0.8.0 tqdm/4.28.1 CPython/3.6.6

File hashes

Hashes for HiCMatrix-5.tar.gz
Algorithm Hash digest
SHA256 be2bb4055475917eaf122cb88f16e65a4f8f03fc567a11c14ead3014d69f17ce
MD5 08b3d0c07a5815c960e7cb85b1ff731f
BLAKE2b-256 8df10bb782055ee30636cc2469cf7cf43e38d8311e338543e8887dc31efba323

See more details on using hashes here.

File details

Details for the file HiCMatrix-5-py3-none-any.whl.

File metadata

  • Download URL: HiCMatrix-5-py3-none-any.whl
  • Upload date:
  • Size: 34.0 kB
  • Tags: Python 3
  • Uploaded using Trusted Publishing? No
  • Uploaded via: twine/1.12.1 pkginfo/1.4.2 requests/2.20.1 setuptools/40.6.2 requests-toolbelt/0.8.0 tqdm/4.28.1 CPython/3.6.6

File hashes

Hashes for HiCMatrix-5-py3-none-any.whl
Algorithm Hash digest
SHA256 7387dd6233db1fe521afb376bfd097701e6e4b7a28b510c1af8c92ce8d7c62b7
MD5 a6db800813d616a9999acd497fae9a09
BLAKE2b-256 c5f763896fd185f2ba9ded78799f436ccda767bb96c90a8c4ee1b663ebf621e8

See more details on using hashes here.

File details

Details for the file HiCMatrix-5-py2-none-any.whl.

File metadata

  • Download URL: HiCMatrix-5-py2-none-any.whl
  • Upload date:
  • Size: 23.0 kB
  • Tags: Python 2
  • Uploaded using Trusted Publishing? No
  • Uploaded via: twine/1.12.1 pkginfo/1.4.2 requests/2.20.1 setuptools/40.6.2 requests-toolbelt/0.8.0 tqdm/4.28.1 CPython/3.6.6

File hashes

Hashes for HiCMatrix-5-py2-none-any.whl
Algorithm Hash digest
SHA256 5822d1f7b0fde7345ba9eaa1b9122a925013d0498d86fb30ec46e9945a5b6953
MD5 a8a9d881c4c53803bb303b8725f0d7dd
BLAKE2b-256 4eba0baa02503d49e34eb987676ae9020f7fb8d9164e55f25f14d6b7d3610afa

See more details on using hashes here.

Supported by

AWS AWS Cloud computing and Security Sponsor Datadog Datadog Monitoring Fastly Fastly CDN Google Google Download Analytics Microsoft Microsoft PSF Sponsor Pingdom Pingdom Monitoring Sentry Sentry Error logging StatusPage StatusPage Status page