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FASTQ Shuffling Tool For Sanity Check in Hi-C Differential Contact Analysis

Project description

HiCShuffle

PyPI version DOI:10.1101/2021.09.23.459925 MIT license Linux

FASTQ Shuffling Tool For Sanity Check in Hi-C Differential Contact Analysis

HiCShuffle

Installation

pip install hicshuffle

Usage

hicshuffle <command> [options]

Commands:
    diff            FASTQ Shuffling Tool For Sanity Check in Hi-C Differential Contact Analysis
Run hicshuffle <command> -h for help on a specific command.

HiCShuffle: FASTQ Shuffling Tool For Sanity Check in Hi-C Differential Contact Analysis

positional arguments:
  command     Subcommand to run

optional arguments:
  -h, --help  show this help message and exit
  --version   show program's version number and exit

hicshuffle diff [-h] query_path_1 query_path_2 reference_path_1 reference_path_2 output_directory

FASTQ Shuffling Tool For Sanity Check in Hi-C Differential Contact Analysis

positional arguments:
  query_path_1      Path for READ1 of GZ-Compressed or Uncompressed Query FASTQ
  query_path_2      Path for READ2 of GZ-Compressed or Uncompressed Query FASTQ
  reference_path_1  Path for READ1 of GZ-Compressed or Uncompressed Reference FASTQ
  reference_path_2  Path for READ2 of GZ-Compressed or Uncompressed Reference FASTQ
  output_directory  Output Directory... HiCShuffle Will Generate Output Directory If Not Existent

optional arguments:
  -h, --help         show this help message and exit

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Source Distribution

HiCShuffle-1.1.1.tar.gz (3.7 kB view hashes)

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