Create HyRes peptide PDB files with specified geometry
Project description
HyresBuilder: A simple package for building HyRes peptide model.
This package is forked from PeptideBuilder and we do some modifications for HyRes.
Thanks for the contribution of PeptideBuilder.
Shanlong Li
Installation:
pip install HyresBuilder
Basic usage:
This package builds HyRes peptide structure from sequence. Please see the examples for details.
To obtain psf file and further run simulation on OpenMM, please follow these instructions.
[!NOTE] After obtaining the pdb files, the initial structures need to be relaxed to get more reasonable state.
Project details
Release history Release notifications | RSS feed
Download files
Download the file for your platform. If you're not sure which to choose, learn more about installing packages.
Source Distribution
HyresBuilder-2.3.3.tar.gz
(16.9 kB
view details)
Built Distribution
File details
Details for the file HyresBuilder-2.3.3.tar.gz
.
File metadata
- Download URL: HyresBuilder-2.3.3.tar.gz
- Upload date:
- Size: 16.9 kB
- Tags: Source
- Uploaded using Trusted Publishing? Yes
- Uploaded via: twine/5.0.0 CPython/3.12.2
File hashes
Algorithm | Hash digest | |
---|---|---|
SHA256 | e7c54e1fef331ebb679dad859d2be16c8c7502aede7228b1fabe7de54fc010ab |
|
MD5 | 4750583fbe4ba9ad7ec087c4b1e85e91 |
|
BLAKE2b-256 | d63b1802805472df67199fc4eaff172fda4d8b5441bacb140fb7dd27304dd27f |
File details
Details for the file HyresBuilder-2.3.3-py3-none-any.whl
.
File metadata
- Download URL: HyresBuilder-2.3.3-py3-none-any.whl
- Upload date:
- Size: 15.5 kB
- Tags: Python 3
- Uploaded using Trusted Publishing? Yes
- Uploaded via: twine/5.0.0 CPython/3.12.2
File hashes
Algorithm | Hash digest | |
---|---|---|
SHA256 | a089bb4c2c869851ab9d1b293fd96b87c505354456e218bc5e08f82c726f66b1 |
|
MD5 | fc9ac1f4de0698e5c78b123bad7f4a02 |
|
BLAKE2b-256 | ff4d2ffeb042e79496c9c4ae3b2d96551e0dd9be60d56e161e5c99cdd827fefa |