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A parser for ISCN data.

Project description

ISCNSNAKE : ISCN Structural and Numerical Analysis of Karyotype Entries

ISCNSNAKE is a tool to use with ISCN : the International System for Cytogenic Nomenclature written in python 3.7. The repository contains three python files, one is the core of the module (ISCNParser.py) and the second (run_SNAKE.py) is a quick script that executes the main function of ISCNParser. Most features are accessible through the console menu that opens when the script is ran but if you want to automate multiple files or do something more complicated it is suggested that you import the module into your own script. The third script (quick_run_SNAKE.py) runs ISCNParser at the default settings with users only having to specify the location of the Mitelman database on their computer, the desired output folder and filenames, and any criteria they wish to use as filters. For a description on how to use these filters consult readthedocs.org/ISCNSNAKE/

Prerequisites

Python 3.0 or greater

Python modules

  • pandas
  • numpy

Documentation

Available at iscnsnake.readthedocs.io

Authors

Acknowledgments

  • Samuel Germain for creating the prototype of this program in shell and perl and providing the basis for the core algorithm
  • cyDAS(cyDAS.org) for helping to check proper function
  • Bjorn Haave for assisting
  • Vizeacoumar lab

Project details


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Filename, size & hash SHA256 hash help File type Python version Upload date
ISCNSNAKE-2.2.2-py2.py3-none-any.whl (45.2 kB) Copy SHA256 hash SHA256 Wheel py2.py3 Aug 16, 2018
ISCNSNAKE-2.2.2.tar.gz (25.1 kB) Copy SHA256 hash SHA256 Source None Aug 16, 2018

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