JWST-FOV-plotter 0.1.1

Simple tools to easily represent JWST FOVs.

JWST FOV Plotter is a very simple package created to facilitate representing the apertures of the different James Webb Space Telescope instruments on the sky projection.

It allows to easily plot any FOV configuration by only specifying some central pointing coordinates, rotation angle and any selection of instruments/apertures. Moreover, the pointing coordinates and rotation angle can be given in the ideal coordinate system of any specific instrument.

Additionally, the package includes a function to quickly generate DS9 region files.

Useful Links:

JWST Field of View

JWST Instrument Ideal Coordinate Systems

Installation:

Through pip:

pip install JWST_FOV_plotter

Alternatively, you can download the source code, move to the main folder and run:

python setup.py install

Description and instructions:

The package essentially consists of only two main functions:

• plot_JWST_FOVs (ra, dec, fovs=None, ax=None, ref_instrument='NIRCam', rot=0, instr_to_plot=['NIRCam', 'NIRSpec', 'MIRI', 'NIRISS'], colormap=None, color=None, NIRCam_long_wl=True, NIRCam_short_wl=True, NIRCam_coron=True, NIRSpec_MSA=True, NIRSpec_IFU=True, NIRSpec_fixed_slits=True, MIRI_imag=True, MIRI_IFU=True, MIRI_4QPM=True, MIRI_Lyot=True, MIRI_slit=True, NIRISS_WFSS=True, NIRISS_AMI=True, **kwargs):

plot_JWST_FOVs receives a pair of ra, dec coordinates in degrees, a counterclockwise rotation angle in degrees rot, the name of the instrument to use as reference for the pointing ref_instrument (default: 'NIRCam') and a matplotlib axes ax to plot the resulting FOV. If no ax is specified, it will use the current axis from matplotlib at the time of calling the function, but it is advisable to specify the ax, specially when plotting on top of a background .fits image.

The function uses the values from the SIAF table available in the JWST FOV documentation. That table contains the geometry of all the different apertures in the V2V3 coordinate system. If desired, a different V2V3 apertures table can be used instead (fovs='my_own_SIAF_table.csv'). The given table must be in .csv or .fits format, and it must include at least all the columns present in the original SIAF table. The default V2V3 FOV geometry will be updated in future versions of the package in the event of any future official modification of the values previously given.

By default, all the JWST apertures are represented. In order to remove any of them, a set of boolean variables is available. Setting any of them to False will remove its corresponding aperture from the final plot (e.g., NIRCam_long_wl=False). These are all the available options:

Optional argument	Aperture
NIRCam_long_wl	NIRCam long wavelength detectors
NIRCam_short_wl	NIRCam short wavelength detectors
NIRCam_coron	NIRCam coronagraph masks
NIRSpec_MSA	NIRSpec MSA
NIRSpec_IFU	NIRSpec IFU
NIRSpec_fixed_slits	NIRSpec fixed slits
MIRI_imag	MIRI imaging
MIRI_IFU	MIRI IFU
MIRI_4QPM	MIRI 4QPM coronagraphs
MIRI_Lyot	MIRI Lyot coronagraph
MIRI_slit	MIRI slit of the LRS
NIRISS_WFSS	NIRISS WFSS
NIRISS_AMI	NIRISS AMI

To turn off all the apertures of any instruments, it exists the the option of just removing their name from the instr_to_plot argument (default: ['NIRCam', 'NIRSpec', 'MIRI', 'NIRISS']). In this way, by setting instr_to_plot=['NIRCam', 'MIRI'], the function would only plot the FOV of those two instruments without needing to switch off all the individual apertures of the other unwanted instruments with the booleans listed above.

Any extra matplotlib plotting parameters can be also added to the arguments of plot_JWST_FOVs. As some particularly useful examples, inputing a matplotlib transparency alpha value will plot shaded filled regions instead of just the edges of the apertures, while specifying a small value for linewidth will plot thinner edges.

In addition to plotting the FOV in the corresponding matplotlib figure, the function also returns a pandas.DataFrame object with the resulting geometry of the plotted FOV in ICRS coordinates.

• create_ds9_region (out, ra, dec, fovs=None, ref_instrument='NIRCam', rot=0, instr_to_plot=['NIRCam', 'NIRSpec', 'MIRI', 'NIRISS'], colormap=None, color=None, NIRCam_long_wl=True, NIRCam_short_wl=True, NIRCam_coron=True, NIRSpec_MSA=True, NIRSpec_IFU=True, NIRSpec_fixed_slits=True, MIRI_imag=True, MIRI_IFU=True, MIRI_4QPM=True, MIRI_Lyot=True, MIRI_slit=True, NIRISS_WFSS=True, NIRISS_AMI=True, extra_params=''):

create_ds9_region generates a DS9 region file named out from a pair of ra, dec coordinates in degrees, a counterclockwise rotation angle in degrees rot, the name of the instrument to use as reference for the pointing ref_instrument (default: 'NIRCam').

Indeed, the way create_ds9_region works is essentially identical as how plot_JWST_FOVs does, the main difference being that this time no axes ax are required as the function is not going to plot on a figure. Instead, an output file name must be specified for the DS9 region file to be created.

By default, the region files generated will include one aperture per line in the form of a polygon constitued by 4 vertices plus a color parameter. Any extra DS9 region parameters can be added at the end of each line passing them in str format through the extra_params argument (e.g., extra_params='dash=1 highlite=1 width=2').

In addition to generating the DS9 region file with the corresponding JWST FOV, the function also returns a pandas.DataFrame object with the resulting geometry of the plotted FOV in ICRS coordinates (exactly identical to that returned by plot_JWST_FOVs).

Complete example script

The script below gives an overview of the different utilities in JWST_FOV_plotter. In this example, we plot a .fits as background image making use of the astropy package and the matplotlib.pyplot.imshow function. Some arbitrary JWST FOVs are represented in top of the background image using the JWST_FOV_plotter.plot_JWST_FOVs function. In the last part of the script, we show how to create a DS9 region file with our pointig FOVs through the JWST_FOV_plotter.create_ds9_region function, as well as how to save the pointing FOV geometry in ICRS coordinates to a .csv table if desired.

# Complete example of the use of plot_JWST_FOVs and create_ds9_region to
# represent JWST FOVs over a background .fits image and make ds9 regions
# of any desired JWST aperture, respectively.

###############################################################################
# Importing functions and libraries.

import matplotlib.pyplot as plt
from astropy.io import fits
from astropy import wcs
from JWST_FOV_plotter import plot_JWST_FOVs, create_ds9_region

###########################################################################
# Plotting example.
###########################################################################

# Loading .fits image to be plotted as background (if desired).
ima = fits.open('F160W_aegis_3dhst_example_image.fits')

# Loading WCS information from the image header.
w = wcs.WCS(ima[0].header)

# Creating the figure.
fig = plt.figure()

# Defining axes.
# Remove the projection=w argument if not using a background .fits image.
ax = fig.add_subplot(111, projection=w)
ax.set_xlabel('RA')
ax.set_ylabel('Dec')

# Plotting .fits image.
# WARNING: To save compilation time, remove the interpolation='None'
# argument (or set it to any other value among those supported by imshow)
# to carry out quick tests before plotting the final image.

ax.imshow(ima[0].data, cmap='Greys', origin='lower', interpolation='None',
          vmin=0, vmax=0.01)

#####################
# Plotting JWST FOVs.

# Setting reference instrument for the pointing.
# Possible values: 'NIRCam', 'NIRSpec', 'MIRI', 'NIRISS'
ref_inst = 'NIRSpec'

# Pointing coordinates in degrees.
ra = 215.069306
dec = 52.9483236

# APA angle of the reference instrument in degrees.
ang = 110

# Remove the transform=ax.get_transform('icrs') argument if not using a
# background .fits image.

plot_JWST_FOVs(ra, dec, rot=ang, ax=ax, ref_instrument=ref_inst,
               transform=ax.get_transform('icrs'))

# More JWST FOVs.
# This time, we will not plot NIRSpec nor NIRISS, and will also skip the
# NIRCam coronagraph apertures, for example.
# Adding an alpha value (between 0-1) will plot shaded areas instead of
# only contours.

plot_JWST_FOVs(ra, dec, rot=ang-15, ax=ax, ref_instrument=ref_inst,
               instr_to_plot=['NIRCam', 'MIRI'], NIRCam_coron=False,
               linewidth=0.2, alpha=0.3, color='magenta',
               transform=ax.get_transform('icrs'))

# Saving plot.
plt.savefig('My_JWST_FOVs_test.pdf')
plt.close(fig)
ima.close()

###########################################################################
# DS9 region file creation example.
###########################################################################

# For simplicity, we will use the same ra, dec, ang and ref_inst previously
# defined in the script.

# Creating the DS9 region file with some arbitrary optional arguments.

create_ds9_region('My_JWST_FOV_DS9_region.reg', ra, dec, rot=ang,
                  ref_instrument=ref_inst,
                  instr_to_plot=['NIRCam', 'MIRI'], NIRCam_coron=False)

# If you want to save your pointing FOV geometry in ICRS coordinates to a
# .csv table for other purposes, you can get them this way.

radec_fovs = create_ds9_region('../My_JWST_FOV_DS9_region.reg', ra, dec,
                               rot=ang, ref_instrument=ref_inst,
                               NIRCam_coron=False,
                               instr_to_plot=['NIRCam', 'MIRI'])

radec_fovs.to_csv('My_pointing_FOV.csv', index=False)

I hope this simple package can help you to save some time. In case of needing some help using the package, do not hesitate to contact me at [e-mail] or [e-mail].