Skip to main content
Donate to the Python Software Foundation or Purchase a PyCharm License to Benefit the PSF! Donate Now

Combining gene-set analysis with network properties.

Project description

For a proper installation of Kiwi, follow the instructions in the Package Documentation.

For a quick flavor of Kiwi, you can download the package from the Python Package Index (PyPI), open the command-prompt, navigate to the folder where the package was downloaded, and run:

> tar -xvf KiwiDist-put.version.number.tar.gz

> cd KiwiDist-put.version.number

> python -c “import kiwi; kiwi.plot(gsn=’kiwi/demo/GSN.txt’, gss=’kiwi/demo/GSS_LUAD.txt’, gls=’kiwi/demo/GLS_LUAD.txt’, gsc=’kiwi/demo/GSC_LUAD.txt’, nwf=’exampleNetworkPlot.pdf’, hmf=’exampleHeatmap.pdf’)”

This command fails if the dependencies (chiefly numpy, matplotlib, networkx) are not properly installed for the Python interpreter called by the command prompt. If you are using Canopy, follow the instructions above and precede the last command with: %system.

This run will produce two example figures. We recommend to follow proper installation procedures and use the Python interpreter to run Kiwi.

Project details


Download files

Download the file for your platform. If you're not sure which to choose, learn more about installing packages.

Filename, size & hash SHA256 hash help File type Python version Upload date
KiwiDist-0.3.6.tar.gz (1.0 MB) Copy SHA256 hash SHA256 Source None

Supported by

Elastic Elastic Search Pingdom Pingdom Monitoring Google Google BigQuery Sentry Sentry Error logging AWS AWS Cloud computing DataDog DataDog Monitoring Fastly Fastly CDN SignalFx SignalFx Supporter DigiCert DigiCert EV certificate StatusPage StatusPage Status page