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Combining gene-set analysis with network properties.

Project description

For a proper installation of Kiwi, follow the instructions in the Package Documentation.

For a quick flavor of Kiwi, you can download the package from the Python Package Index (PyPI), open the command-prompt, navigate to the folder where the package was downloaded, and run:

> tar -xvf KiwiDist-put.version.number.tar.gz

> cd KiwiDist-put.version.number

> python -c “import kiwi; kiwi.plot(gsn=’kiwi/demo/GSN.txt’, gss=’kiwi/demo/GSS_LUAD.txt’, gls=’kiwi/demo/GLS_LUAD.txt’, gsc=’kiwi/demo/GSC_LUAD.txt’, nwf=’exampleNetworkPlot.pdf’, hmf=’exampleHeatmap.pdf’)”

This command fails if the dependencies (chiefly numpy, matplotlib, networkx) are not properly installed for the Python interpreter called by the command prompt. If you are using Canopy, follow the instructions above and precede the last command with: %system.

This run will produce two example figures. We recommend to follow proper installation procedures and use the Python interpreter to run Kiwi.

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Filename, size & hash SHA256 hash help File type Python version Upload date
KiwiDist-0.3.6.tar.gz (1.0 MB) Copy SHA256 hash SHA256 Source None Dec 21, 2016

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