Modules for LD computing, liftover and region extraction
Project description
Scalable pipeline for computing LD matrix in big sample phenotype
4 modules
- Genodata
- Sumstats
- Liftover
- LDmatrix
Install
pip install LDtoolsets
How to use
lf = Liftover('hg38','hg19')
vcf ='/home/yh3455/Github/SEQLinkage/MWE/small_sample_ii_coding.vcf.gz'
lf.vcf_liftover(vcf)
!which python
/home/yh3455/miniconda3/bin/python
Release history Release notifications | RSS feed
Download files
Download the file for your platform. If you're not sure which to choose, learn more about installing packages.
Source Distribution
LDtoolsets-0.0.10.tar.gz
(91.7 kB
view hashes)
Built Distribution
Close
Hashes for LDtoolsets-0.0.10-py3-none-any.whl
| Algorithm | Hash digest | |
|---|---|---|
| SHA256 | c91bf6145e6892354ca7e9fe0e66ad70d4c50d14e701de9d52d60bd2f764bdf9 |
|
| MD5 | 5e0e59b47bf7d2b7e17b0dba4b4ce517 |
|
| BLAKE2b-256 | 9fc09901454b8d4a46bda2973a08f7c8d3ebf229c0ad44d699659dced1d0507f |
