Modules for LD computing, liftover and region extraction
Project description
Scalable pipeline for computing LD matrix in big sample phenotype
4 modules
- Genodata
- Sumstats
- Liftover
- LDmatrix
Install
pip install LDtoolsets
How to use
lf = Liftover('hg38','hg19')
vcf ='/home/yh3455/Github/SEQLinkage/MWE/small_sample_ii_coding.vcf.gz'
lf.vcf_liftover(vcf)
!which python
/home/yh3455/miniconda3/bin/python
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