Modules for LD computing, liftover and region extraction
Project description
Scalable pipeline for computing LD matrix in big sample phenotype
4 modules
- Genodata
- Sumstats
- Liftover
- LDmatrix
Install
pip install LDtoolsets
How to use
lf = Liftover('hg38','hg19')
vcf ='/home/yh3455/Github/SEQLinkage/MWE/small_sample_ii_coding.vcf.gz'
lf.vcf_liftover(vcf)
!which python
/home/yh3455/miniconda3/bin/python
Project details
Release history Release notifications | RSS feed
Download files
Download the file for your platform. If you're not sure which to choose, learn more about installing packages.
Source Distribution
LDtoolsets-0.0.4.tar.gz
(13.5 kB
view hashes)
Built Distribution
LDtoolsets-0.0.4-py3-none-any.whl
(12.3 kB
view hashes)
Close
Hashes for LDtoolsets-0.0.4-py3-none-any.whl
Algorithm | Hash digest | |
---|---|---|
SHA256 | 368dcd70bf7770fb5f69da366a0533cc7b5449a4d7d5234250220f6bc5ff7454 |
|
MD5 | b5f7a83cd8a5e75a8611cae5e782ca0b |
|
BLAKE2b-256 | 229b0c20465a9bf901a2a2521301d6de77a3df671aeaf11d039d4b19fa24a59e |