Linear Superbubble Detector
Introduction
This project gives the reference implementation of the Linear Superbubble Dector (LSD).
Features
Detect superbubbles in linear time
Uses NetworkX as graph library
Can load plenty file formats (everything that NetworkX can load )
Have different ways to report the superbubbles
Simple and clean code
Simple to understand and reimplement
Documentation
The documentation can be found at: https://fabianexe.github.io/Superbubble
Installation
The simples way to install is using pip:
pip install LSD-Bubble
You can also download the source from https://github.com/Fabianexe/Superbubble and run the make script to install the package. These needs that setuptools are installed.
Usage
The programms needs only a path to a graph file to work and the algorithm that it should use:
lsd d path
If you want other detection algorithm try:
lsd p path
or
lsd o path
If as input format not edgelist is used give the format with the -f parameter
lsd d path -f gml
If you want a different reporting format use -r
lsd d path -r count
If you want not to detect superbubbles but week superbubbles use –week:
lsd d path –week
1 maintainer
Metadata
1 maintainer
Release files for LSD-Bubble 2.0
For a detailed explanation of source distributions (sdists) and built distributions (wheels), please see the package formats documentation.
Source distribution (sdist)
| File | Size | Uploaded | |
|---|---|---|---|
| LSD-Bubble-2.0.tar.gz | 16.1 kB | Details |
Built distributions (wheels)
| File | Interpreter | ABI | Platform | Reset |
|---|---|---|---|---|
| LSD_Bubble-2.0-py3.7.egg | Legacy Egg format | - | - | Details |
| LSD_Bubble-2.0-py3-none-any.whl | Python 3 | none | any | Details |
Total release size: 140.6 kB
Release files / LSD-Bubble-2.0.tar.gz
| Download URL | LSD-Bubble-2.0.tar.gz |
|---|---|
| Size | 16.1 kB |
| Tags | Source |
|
SHA-256 checksum How to use checksums |
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| Upload date | |
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Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
twine/1.13.0 pkginfo/1.5.0.1 requests/2.21.0 setuptools/40.4.1 requests-toolbelt/0.9.1 tqdm/4.31.1 CPython/3.7.0
|
Release files / LSD_Bubble-2.0-py3.7.egg
| Download URL | LSD_Bubble-2.0-py3.7.egg |
|---|---|
| Size | 88.6 kB |
| Tags | Egg |
|
SHA-256 checksum How to use checksums |
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| Uploaded via |
twine/1.13.0 pkginfo/1.5.0.1 requests/2.21.0 setuptools/40.4.1 requests-toolbelt/0.9.1 tqdm/4.31.1 CPython/3.7.0
|
Release files / LSD_Bubble-2.0-py3-none-any.whl
| Download URL | LSD_Bubble-2.0-py3-none-any.whl |
|---|---|
| Size | 36.0 kB |
| Tags | Python 3 |
|
SHA-256 checksum How to use checksums |
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BLAKE2b-256 checksum How to use checksums |
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Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
twine/1.13.0 pkginfo/1.5.0.1 requests/2.21.0 setuptools/40.4.1 requests-toolbelt/0.9.1 tqdm/4.31.1 CPython/3.7.0
|
