Detect all superbubbles in a graph.
Linear Superbubble Detector
This project gives the reference implementation of the Linear Superbubble Dector (LSD).
The documentation can be found at: https://fabianexe.github.io/Superbubble
The simples way to install is using pip:
pip install LSD-Bubble
The programms needs only a path to a graph file to work and the algorithm that it should use:
lsd d path
If you want other detection algorithm try:
lsd p path
lsd o path
If as input format not edgelist is used give the format with the -f parameter
lsd d path -f gml
If you want a different reporting format use -r
lsd d path -r count
If you want not to detect superbubbles but week superbubbles use –week:
lsd d path –week
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