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Project description

MGSurvE: Mosquito Gene SurveillancE

MGSurvE is a project that optimizes mosquito traps' placement in complex heterogeneous landscapes in an effort to minimize the time to detection of genetic variants of interest.

Please have a look at the documentation for more info and our pypi package for detailed installation instructions, and tutorials.

PyPI - Python Version PyPI version Docker Unit Tests Flake8 Conda License: GPL v3 Open Source? Yes!

To install the package's latest stable version run (usage of anaconda for environment management is strongly recommended):

pip install MGSurvE

MGSurvE requires the installation of the DEAP optimization package, which should be installed automatically with our previous pip command. This package can also be installed with conda install deap, if needed; or by having a look at DEAP's documentation for additional methods. Please have a look at our installation instructions for common issues with some of the dependencies. Alternatively, pre-build images from our Dockerhub can be pulled and used to avoid dependencies issues.


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