MedVol 0.0.9

A wrapper for loading medical 3D image volumes such as NIFTI or NRRD images.

MedVol

A wrapper for loading medical 3D image volumes such as NIFTI or NRRD images.

Installation

You can install medvol via pip:

pip install medvol

Example

from medvol import MedVol

# Load NIFTI image
image = MedVol("path/to/image.nifti")

# Print some metadata
print("Spacing: ", image.spacing)
print("Affine: ", image.affine)
print("Header: ", image.header)

# Access and modify the image array
arr = image.array
arr[0, 0, 0] = 1

# Create a new image with the new array, a new spacing, but copy all remaining metadata
new_image = MedVol(arr, spacing=[2, 2, 2], copy=image)

# Save the new image as NRRD
new_image.save("path/to/new_image.nrrd")

Contributing

Contributions are very welcome. Tests can be run with tox, please ensure the coverage at least stays the same before you submit a pull request.

License

Distributed under the terms of the Apache Software License 2.0 license, "medvol" is free and open source software

Issues

If you encounter any problems, please file an issue along with a detailed description.