MetaChecka2000
Project description
.
. 888b d888 .d8888b. .d8888b. 888 d8P
. 8888b d8888 d88P Y88b d88P Y88b 888 d8P
. 88888b.d88888 888 888 888 888 d8P
. 888Y88888P888 888 .d88P 888d88K
. 888 Y888P 888 888 .od888P" 8888888b
. 888 Y8P 888 888 888 d88P" 888 Y88b
. 888 " 888 Y88b d88P 888" 888 Y88b
. 888 888 "Y8888P" 888888888 888 Y88b
.
Overview
=========
MetaChecka is a metagenomic QA toolset. It uses sets of reference
genes to test for bin completeness and contamination
Installation
=========
Should be as simple as
pip install MetaChecka2000
Data preparation and running MetaChecka2000
=========
MetaChecka2000 expects to see a folder containing one or more multiple fasta
files containg assembled and binned contigs, one file for each bin.
You need to:
1. Extract genes from the contigs
2. Use hmmer to match these genes to an existing database
3. Do some counting
Use: metachecka2000 -h for more detailed help
Licence and referencing
=========
Project home page, info on the source tree, documentation, issues and how to contribute, see http://github.com/minillinim/MetaChecka2000
This software is currently unpublished. Please contact me at m_dot_imelfort_at_uq_dot_edu_dot_au for more information about referencing this software.
Copyright © 2012 Michael Imelfort, Connor Skennerton. See LICENSE.txt for further details.
. 888b d888 .d8888b. .d8888b. 888 d8P
. 8888b d8888 d88P Y88b d88P Y88b 888 d8P
. 88888b.d88888 888 888 888 888 d8P
. 888Y88888P888 888 .d88P 888d88K
. 888 Y888P 888 888 .od888P" 8888888b
. 888 Y8P 888 888 888 d88P" 888 Y88b
. 888 " 888 Y88b d88P 888" 888 Y88b
. 888 888 "Y8888P" 888888888 888 Y88b
.
Overview
=========
MetaChecka is a metagenomic QA toolset. It uses sets of reference
genes to test for bin completeness and contamination
Installation
=========
Should be as simple as
pip install MetaChecka2000
Data preparation and running MetaChecka2000
=========
MetaChecka2000 expects to see a folder containing one or more multiple fasta
files containg assembled and binned contigs, one file for each bin.
You need to:
1. Extract genes from the contigs
2. Use hmmer to match these genes to an existing database
3. Do some counting
Use: metachecka2000 -h for more detailed help
Licence and referencing
=========
Project home page, info on the source tree, documentation, issues and how to contribute, see http://github.com/minillinim/MetaChecka2000
This software is currently unpublished. Please contact me at m_dot_imelfort_at_uq_dot_edu_dot_au for more information about referencing this software.
Copyright © 2012 Michael Imelfort, Connor Skennerton. See LICENSE.txt for further details.
Download files
Download the file for your platform. If you're not sure which to choose, learn more about installing packages.
Source Distribution
MetaChecka2000-0.1.3.tar.gz
(22.4 kB
view details)
File details
Details for the file MetaChecka2000-0.1.3.tar.gz.
File metadata
- Download URL: MetaChecka2000-0.1.3.tar.gz
- Upload date:
- Size: 22.4 kB
- Tags: Source
- Uploaded using Trusted Publishing? No
File hashes
| Algorithm | Hash digest | |
|---|---|---|
| SHA256 | 63ae4721a8dd7dd5f8ee9d2f27ef19ead7df576325cc5d71680fbc1b3ae05533 |
|
| MD5 | 59de3b74b932553a71eadc7a57a5d498 |
|
| BLAKE2b-256 | 13b905ebf86eb8827c5bfff2d4633acf6db8d46fd4146f10cf864c6d71645221 |
