MicroView 0.9.1

Generate reports from metagenomics data

MicroView

MicroView, a reporting tool for taxonomic classification

MicroView agreggates results from taxonomic classification tools, such as Kaiju and Kraken, building an interactive HTML report with insightful visualizations.

Quickstart

Install the package:

pip install microview

Go to your directory containing Kaiju/Kraken-style results and run:

microview -t .

Alternatively, if you have a CSV table defining result paths and contrasts, like this:

sample,group
result_1.tsv,group_one
result_2.tsv,group_two
...etc...

You can run MicroView like this:

microview -df contrast_table.csv -o report_with_table.html

Then, an HTML file named microview_report.html - or the name you defined with the -o param - should be available in your working directory, try opening it with your browser!