Miscoto

Microbiome Screening and COmmunity selection using TOpology

Project description

MiSCoTo is a Python3 tool to explore microbiomes and select minimal communities within them. It uses Answer Set Programming (ASP) to optimize community selection. Inputs: metabolic models, seeds (growth medium) and metabolic targets. Computations can be performed with a set of symbionts or a set of symbionts and a host. In the latter case, targets will be produced by the host, whereas in the former they will be produced by any member of the microbiome. More information on usage and troubleshooting on Github: https://github.com/cfrioux/miscoto

Project details

Release history Release notifications | RSS feed

3.2.0

Feb 28, 2024

3.1.2

Mar 18, 2022

3.1.1

Feb 22, 2021

3.1.0

Jan 9, 2021

3.0.3

Dec 3, 2020

3.0.2

Nov 18, 2020

3.0.1

Oct 30, 2020

3.0.0

Oct 26, 2020

2.1.2

Sep 16, 2020

2.1.1

Jul 28, 2020

2.1.0

Jul 7, 2020

2.0.8

Jun 30, 2020

2.0.7

Apr 20, 2020

2.0.6

Oct 29, 2019

2.0.5

Oct 16, 2019

2.0.4

Sep 1, 2019

2.0.3

Aug 31, 2019

2.0.2

Jun 3, 2019

2.0.1

Jun 3, 2019

2.0.0

Jun 3, 2019

1.2.0

May 23, 2019

1.1.6

Mar 18, 2019

1.1.5

Mar 18, 2019

1.1.4

Mar 15, 2019

1.1.3

Mar 13, 2019

1.1.2

Mar 13, 2019

This version

1.1.1

Mar 8, 2019

1.1.0

Feb 19, 2019

1.0.1

Jan 9, 2019

1.0.0

Jul 4, 2018

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