Miscoto 2.0.0

Microbiome Screening and COmmunity selection using TOpology

MiSCoTo is a Python3 tool to explore microbiomes and select minimal communities within them. It uses Answer Set Programming (ASP) to optimize community selection. Inputs: metabolic models, seeds (growth medium) and metabolic targets. Computations can be performed with a set of symbionts or a set of symbionts and a host. In the latter case, targets will be produced by the host, whereas in the former they will be produced by any member of the microbiome. More information on usage and troubleshooting on Github: https://github.com/cfrioux/miscoto