MoNeT python package
Project description
This module was created to accompany the MGDrivE and MoNeT projects to make the analysis of the spatiotemporal simulations of gene-drive spreads as seamless as possible.
It is also meant to serve as a platform to ensure the reproducibility of results of the publications from our research group at UC, Berkeley, as part of DARPA's: Safe Genes program and UCI Malaria Initiative.
Project Status
Our code is currently under beta testing by the gene-drive data analysis team: Biyonka Liang, Gillian Chu, Maya Shen. As well as under intense development by the dev team: Héctor M. Sánchez C., Victor Ferman, and Sarafina Smith.
For some examples of how this package is being currently used, please follow this link.
Installation
It is highly recommended to download and install our anaconda environment:
conda env create -f MoNeT.yml -n MoNeT
To install from pypi with pip:
pip install MoNeT-MGDrivE
Alternatively, the package can be downloaded, and installed with:
pip install .
Make sure to have the following dependencies installed:
Authors
- Lead: Héctor M. Sánchez C.
- Dev: Sarafina Smith, Victor Ferman, Biyonka Liang
- Former Dev: Sabrina Wong
- PI: John M. Marshall
Release history Release notifications | RSS feed
Download files
Download the file for your platform. If you're not sure which to choose, learn more about installing packages.
