EM based transcripts abundance estimation from nanopore reads mapped to a transcriptome with minimap2
Project description
NanoCount estimates transcripts abundance from Oxford Nanopore direct-RNA sequencing datasets, using an expectation-maximization approach like RSEM, Kallisto, salmon, etc to handle the uncertainty of multi-mapping reads
Documentation is available at https://a-slide.github.io/NanoCount/
Please be aware that NanoCount
is a research package that is still under development.
The API, command line interface, and implementation might change without retro-compatibility.
Citing
The repository is archived at Zenodo. If you use NanoCount
please cite as follow:
Adrien Leger. (2020, January 28). a-slide/NanoCount. Zenodo. https://zenodo.org/badge/latestdoi/142873004
Authors and contributors
- Adrien Leger (@a-slide) - aleg {at} ebi.ac.uk
The package was strongly inspired from https://github.com/jts/nanopore-rna-analysis by Jared Simpson
- Jared Simpson (@jts)
Project details
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