NanoCount 0.2.3

EM based transcripts abundance estimation from nanopore reads mapped to a transcriptome with minimap2

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NanoCount estimates transcripts abundance from Oxford Nanopore direct-RNA sequencing datasets, using an expectation-maximization approach like RSEM, Kallisto, salmon, etc to handle the uncertainty of multi-mapping reads

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Documentation is available at https://a-slide.github.io/NanoCount/

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Please be aware that NanoCount is a research package that is still under development. The API, command line interface, and implementation might change without retro-compatibility.

Citing

The repository is archived at Zenodo. If you use NanoCount please cite as follow:

Adrien Leger. (2020, January 28). a-slide/NanoCount. Zenodo. https://zenodo.org/badge/latestdoi/142873004

Authors and contributors

• Adrien Leger (@a-slide) - aleg {at} ebi.ac.uk

The package was strongly inspired from https://github.com/jts/nanopore-rna-analysis by Jared Simpson

• Jared Simpson (@jts)