NanoSplit

Perform splitting of Oxford Nanopore sequencing data in a fail and pass dataset using a user defined quality cutoff. The script can read compressed input and will write to gzip compressed files.

INSTALLATION

pip install NanoSplit

USAGE

NanoSplit [-h] [-q QUALITY] [--outdir OUTDIR] fastqfile


Required arguments:
  fastqfile             Fastq file to split, can be gz compressed.

Optional arguments:
  -h, --help            show this help message and exit
  -q QUALITY, --quality QUALITY
                        Splitting on this average read quality score
                        Default: 12
  --outdir OUTDIR       Specify directory in which output has to be created.

EXAMPLES

NanoSplit reads.fastq.gz
NanoSplit -q 6 reads.fastq.gz
NanoSplit -q 10 --outdir /home/user/datasetsplit/ reads.fastq

Release files for NanoSplit 0.1.4

For a detailed explanation of source distributions (sdists) and built distributions (wheels), please see the package formats documentation.

Source distribution (sdist)

Source distribution for NanoSplit 0.1.4
File	Size	Uploaded
NanoSplit-0.1.4.tar.gz	2.7 kB	Jul 28, 2017	Details

Release files / NanoSplit-0.1.4.tar.gz

Download URL	NanoSplit-0.1.4.tar.gz
Size	2.7 kB
Tags	Source
SHA-256 checksum How to use checksums	`f7d1f60baaef26d62dee25d9ff76b5924fb53757cacfd234c3b7d90192bd16d6`
BLAKE2b-256 checksum How to use checksums	`387fcba70434da0dced7319a980597e85d808347b654de74169713dc631b022c`
Upload date	Jul 28, 2017
Uploaded using Trusted Publishing? What is trusted publishing?	No